WebThe bitscore of Q against LC074724 in 20240824 (2581) would have placed it in 5th position in the top 10 matches of Q, but LC074724 is not matched at all in 20240821! The lowest … WebFeb 17, 2024 · ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores Functional annotation of metagenomic and metatranscriptomic data sets relies on similarity searches based on e-value thresholds resulting in an unknown number of false positive and negative matches.
ROCker: accurate detection and quantification of target genes
WebApr 17, 2024 · BitScores is a unique Yield Farming project that combines the highest percentages of farming with an equal community voice to make critical decisions. … WebOct 7, 2016 · We showcase ROCker using ammonia monooxygenase (amoA) and nitrous oxide reductase (nosZ) genes, mediating oxidation of ammonia and the reduction of the potent greenhouse gas, N2O, to inert N2, respectively. ROCker typically showed 60-fold lower FDR when compared to the common practice of using fixed e-values. thomas hesson
sequence alignment - Bioinformatics Stack Exchange
WebOct 7, 2016 · ROCker workflow for generating simulated shotgun data sets and calculating position-specific and most-discriminant bitscores. (Upper panel) ROCker can be used to perform five independent tasks: (i) Build: Using a user-provided list of unique UniProt protein identifiers for a target protein of interest, ROCker downloads the reference sequences, … WebMar 2, 2024 · Log in. Sign up Weband S(B,B) are the self-alignment bitscores, i.e. the scores of aligning against itself. A distance of 0.0 means A and B are identical. The maximum possible distance is 1.0, meaning there is no BLAST between A and B. This distance should not be interpreted as lack of identity! A distance of 0.0 means 100% identity, ugliest motherboard